Wolfgang Resch - Notes
Home
Publications
2014
Nov 18
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Process a VCF file with htslib
Jul 19
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How to model dwell time of proteins on DNA binding sites in R - part 1
Jun 27
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Visualizing algorithms - an article by Mike Bostock
Jun 26
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Smoothing data with Savitzky-Golay filters
Jun 26
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Use newline or tab in replacement with `replace-string` or `replace-regexp` in emacs
May 22
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Aligning ggplot2 graphs on a page
May 7
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Bash named pipes and process substitution
May 6
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Matching up homologous genes from different organisms with homologene
Apr 24
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Short circuit evaluation of conditionals in bash
Apr 8
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Make tutorial slides geared towards bioinformatics pipelines
Mar 27
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Parallel execution of R code with the multicore package
Mar 26
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PBS job arrays
Feb 28
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Bash module mailcmd
Feb 27
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Background processes, nohup, and disowning your children
Feb 19
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Insert size distribution from paired-end bam files
Jan 31
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Merging bigwig files
2013
Jul 24
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Running a command with a timeout
Jul 11
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How to pick a random subset of lines from file
Jun 24
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Picking illumina index sequence combinations
Jun 21
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Automatically fetch PDFs of UCSC browser views for locations within a given session
Jun 20
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Passing command line arguments into R scripts
Jun 13
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A fun (if hacky) way to determine fastq score types in bash
Jun 12
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Safe locking mechanism in bash to serialize access to some resource
Mar 8
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Inverse hyperbolic sine transformation for ggplot2 using scales
Jan 28
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R project template
Jan 11
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figshare - sharing (unlimited) information publicly with a doi
2012
Dec 12
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.bash_profile vs. .bashrc
Dec 10
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Splitting bash pipelines
Dec 6
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CDE - a tool for reproducible research and application packaging using application virtualization
Nov 30
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Modify splom to use hexbin panels and show pearson correlations
Nov 28
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Faster tunneling of X11 over ssh
Nov 7
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Target specific variables in makefiles
Nov 6
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Create smoothscatter like plots with ggplot2
Nov 2
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Subplots with ggplot2
Nov 1
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Qsub submit jobs from makefile
Oct 31
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Run commands on remote machine with ssh
Oct 31
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Preserve intermediate targets in chains of implicit rules in makefiles
Oct 25
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Use xargs to execute jobs in parallel
2010
Jun 10
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Python pipelines with generators and coroutines